PhytophthoraV1, Main, Exploration, bibRecord, 000754

Global gene expression profiling for fruit organs and pathogen infections in the pepper, Capsicum annuum L.

Identifieur interne : 000754 ( Main/Exploration ); précédent : 000753; suivant : 000755

Global gene expression profiling for fruit organs and pathogen infections in the pepper, Capsicum annuum L.

Auteurs : Myung-Shin Kim [Corée du Sud] ; Seungill Kim [Corée du Sud] ; Jongbum Jeon [Corée du Sud] ; Ki-Tae Kim [Corée du Sud] ; Hyun-Ah Lee [Corée du Sud] ; Hye-Young Lee [Corée du Sud] ; Jieun Park [Corée du Sud] ; Eunyoung Seo [Corée du Sud] ; Saet-Byul Kim [Corée du Sud] ; Seon-In Yeom [Corée du Sud] ; Yong-Hwan Lee [Corée du Sud] ; Doil Choi [Corée du Sud]

Source :

Scientific data [ 2052-4463 ] ; 2018.

RBID : pubmed:29870035

Descripteurs français

KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Capsicum (génétique), Capsicum (parasitologie), Capsicum (virologie), Maladies des plantes (génétique), Maladies des plantes (parasitologie), Maladies des plantes (virologie), Phytophthora infestans (MeSH), Potyvirus (MeSH), Transcriptome (MeSH), Virus de la mosaïque du tabac (MeSH).
MESH :
- génétique : Capsicum, Maladies des plantes.
- parasitologie : Capsicum, Maladies des plantes.
- virologie : Capsicum, Maladies des plantes.
- Analyse de profil d'expression de gènes, Phytophthora infestans, Potyvirus, Transcriptome, Virus de la mosaïque du tabac.

English descriptors

KwdEn :
- Capsicum (genetics), Capsicum (parasitology), Capsicum (virology), Gene Expression Profiling (MeSH), Phytophthora infestans (MeSH), Plant Diseases (genetics), Plant Diseases (parasitology), Plant Diseases (virology), Potyvirus (MeSH), Tobacco Mosaic Virus (MeSH), Transcriptome (MeSH).
MESH :
- genetics : Capsicum, Plant Diseases.
- parasitology : Capsicum, Plant Diseases.
- virology : Capsicum, Plant Diseases.
- Gene Expression Profiling, Phytophthora infestans, Potyvirus, Tobacco Mosaic Virus, Transcriptome.

Abstract

Hot pepper (Capsicum annuum) is one of the most consumed vegetable crops in the world and useful to human as it has many nutritional and medicinal values. Genomic resources of pepper are publically available since the pepper genomes have been completed and massive data such as transcriptomes have been deposited. Nevertheless, global transcriptome profiling is needed to identify molecular mechanisms related to agronomic traits in pepper, but limited analyses are published. Here, we report the comprehensive analysis of pepper transcriptomes during fruit ripening and pathogen infection. For the ripening, transcriptome data were obtained from placenta and pericarp at seven developmental stages. To reveal global transcriptomic landscapes during infection, leaves at six time points post-infection by one of three pathogens (Phytophthora infestans, Pepper mottle virus, and Tobacco mosaic virus P0 strain) were profiled. The massive parallel transcriptome profiling in this study will serve as a valuable resource for detection of molecular networks of fruit development and disease resistance in Capsicum annuum.

DOI: 10.1038/sdata.2018.103
PubMed: 29870035
PubMed Central: PMC5987667

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000745
to stream Main, to step Curation: 000745

Le document en format XML

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<author><name sortKey="Seo, Eunyoung" sort="Seo, Eunyoung" uniqKey="Seo E" first="Eunyoung" last="Seo">Eunyoung Seo</name>
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<author><name sortKey="Kim, Saet Byul" sort="Kim, Saet Byul" uniqKey="Kim S" first="Saet-Byul" last="Kim">Saet-Byul Kim</name>
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<author><name sortKey="Yeom, Seon In" sort="Yeom, Seon In" uniqKey="Yeom S" first="Seon-In" last="Yeom">Seon-In Yeom</name>
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<author><name sortKey="Lee, Yong Hwan" sort="Lee, Yong Hwan" uniqKey="Lee Y" first="Yong-Hwan" last="Lee">Yong-Hwan Lee</name>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Capsicum (genetics)</term>
<term>Capsicum (parasitology)</term>
<term>Capsicum (virology)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Phytophthora infestans (MeSH)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (parasitology)</term>
<term>Plant Diseases (virology)</term>
<term>Potyvirus (MeSH)</term>
<term>Tobacco Mosaic Virus (MeSH)</term>
<term>Transcriptome (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Capsicum (génétique)</term>
<term>Capsicum (parasitologie)</term>
<term>Capsicum (virologie)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (parasitologie)</term>
<term>Maladies des plantes (virologie)</term>
<term>Phytophthora infestans (MeSH)</term>
<term>Potyvirus (MeSH)</term>
<term>Transcriptome (MeSH)</term>
<term>Virus de la mosaïque du tabac (MeSH)</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Capsicum</term>
<term>Plant Diseases</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Capsicum</term>
<term>Maladies des plantes</term>
</keywords>
<keywords scheme="MESH" qualifier="parasitologie" xml:lang="fr"><term>Capsicum</term>
<term>Maladies des plantes</term>
</keywords>
<keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Capsicum</term>
<term>Plant Diseases</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Capsicum</term>
<term>Maladies des plantes</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Capsicum</term>
<term>Plant Diseases</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term>
<term>Phytophthora infestans</term>
<term>Potyvirus</term>
<term>Tobacco Mosaic Virus</term>
<term>Transcriptome</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term>
<term>Phytophthora infestans</term>
<term>Potyvirus</term>
<term>Transcriptome</term>
<term>Virus de la mosaïque du tabac</term>
</keywords>
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<front><div type="abstract" xml:lang="en">Hot pepper (Capsicum annuum) is one of the most consumed vegetable crops in the world and useful to human as it has many nutritional and medicinal values. Genomic resources of pepper are publically available since the pepper genomes have been completed and massive data such as transcriptomes have been deposited. Nevertheless, global transcriptome profiling is needed to identify molecular mechanisms related to agronomic traits in pepper, but limited analyses are published. Here, we report the comprehensive analysis of pepper transcriptomes during fruit ripening and pathogen infection. For the ripening, transcriptome data were obtained from placenta and pericarp at seven developmental stages. To reveal global transcriptomic landscapes during infection, leaves at six time points post-infection by one of three pathogens (Phytophthora infestans, Pepper mottle virus, and Tobacco mosaic virus P0 strain) were profiled. The massive parallel transcriptome profiling in this study will serve as a valuable resource for detection of molecular networks of fruit development and disease resistance in Capsicum annuum.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29870035</PMID>
<DateCompleted><Year>2019</Year>
<Month>02</Month>
<Day>25</Day>
</DateCompleted>
<DateRevised><Year>2019</Year>
<Month>02</Month>
<Day>25</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2052-4463</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>5</Volume>
<PubDate><Year>2018</Year>
<Month>06</Month>
<Day>05</Day>
</PubDate>
</JournalIssue>
<Title>Scientific data</Title>
<ISOAbbreviation>Sci Data</ISOAbbreviation>
</Journal>
<ArticleTitle>Global gene expression profiling for fruit organs and pathogen infections in the pepper, Capsicum annuum L.</ArticleTitle>
<Pagination><MedlinePgn>180103</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1038/sdata.2018.103</ELocationID>
<Abstract><AbstractText>Hot pepper (Capsicum annuum) is one of the most consumed vegetable crops in the world and useful to human as it has many nutritional and medicinal values. Genomic resources of pepper are publically available since the pepper genomes have been completed and massive data such as transcriptomes have been deposited. Nevertheless, global transcriptome profiling is needed to identify molecular mechanisms related to agronomic traits in pepper, but limited analyses are published. Here, we report the comprehensive analysis of pepper transcriptomes during fruit ripening and pathogen infection. For the ripening, transcriptome data were obtained from placenta and pericarp at seven developmental stages. To reveal global transcriptomic landscapes during infection, leaves at six time points post-infection by one of three pathogens (Phytophthora infestans, Pepper mottle virus, and Tobacco mosaic virus P0 strain) were profiled. The massive parallel transcriptome profiling in this study will serve as a valuable resource for detection of molecular networks of fruit development and disease resistance in Capsicum annuum.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kim</LastName>
<ForeName>Myung-Shin</ForeName>
<Initials>MS</Initials>
<AffiliationInfo><Affiliation>Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul 08826, Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kim</LastName>
<ForeName>Seungill</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Jeon</LastName>
<ForeName>Jongbum</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul 08826, Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kim</LastName>
<ForeName>Ki-Tae</ForeName>
<Initials>KT</Initials>
<AffiliationInfo><Affiliation>Department of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lee</LastName>
<ForeName>Hyun-Ah</ForeName>
<Initials>HA</Initials>
<AffiliationInfo><Affiliation>Division of Eco-Friendly Horticulture, Yonam College, Cheonan 31005, Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lee</LastName>
<ForeName>Hye-Young</ForeName>
<Initials>HY</Initials>
<AffiliationInfo><Affiliation>Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Park</LastName>
<ForeName>Jieun</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul 08826, Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Seo</LastName>
<ForeName>Eunyoung</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kim</LastName>
<ForeName>Saet-Byul</ForeName>
<Initials>SB</Initials>
<AffiliationInfo><Affiliation>Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yeom</LastName>
<ForeName>Seon-In</ForeName>
<Initials>SI</Initials>
<AffiliationInfo><Affiliation>Department of Agricultural Plant Science, Division of Applied Life Science (BK21 Plus), Institute of Agriculture & Life Science, Gyeongsang National University, Jinju 52828, Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lee</LastName>
<ForeName>Yong-Hwan</ForeName>
<Initials>YH</Initials>
<AffiliationInfo><Affiliation>Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul 08826, Korea.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Choi</LastName>
<ForeName>Doil</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul 08826, Korea.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<DataBankList CompleteYN="Y"><DataBank><DataBankName>figshare</DataBankName>
<AccessionNumberList><AccessionNumber>10.6084/m9.figshare.c.4070300</AccessionNumber>
</AccessionNumberList>
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<PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2018</Year>
<Month>06</Month>
<Day>05</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Sci Data</MedlineTA>
<NlmUniqueID>101640192</NlmUniqueID>
<ISSNLinking>2052-4463</ISSNLinking>
</MedlineJournalInfo>
<SupplMeshList><SupplMeshName Type="Organism" UI="C000623972">Pepper mottle virus</SupplMeshName>
</SupplMeshList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D002212" MajorTopicYN="N">Capsicum</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000469" MajorTopicYN="N">parasitology</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020869" MajorTopicYN="Y">Gene Expression Profiling</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D055750" MajorTopicYN="N">Phytophthora infestans</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000469" MajorTopicYN="N">parasitology</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017800" MajorTopicYN="N">Potyvirus</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014027" MajorTopicYN="N">Tobacco Mosaic Virus</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D059467" MajorTopicYN="Y">Transcriptome</DescriptorName>
</MeshHeading>
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<Day>28</Day>
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<Month>04</Month>
<Day>06</Day>
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<Day>6</Day>
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<affiliations><list><country><li>Corée du Sud</li>
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<region><li>Région capitale de Séoul</li>
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<settlement><li>Séoul</li>
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<name sortKey="Kim, Saet Byul" sort="Kim, Saet Byul" uniqKey="Kim S" first="Saet-Byul" last="Kim">Saet-Byul Kim</name>
<name sortKey="Kim, Seungill" sort="Kim, Seungill" uniqKey="Kim S" first="Seungill" last="Kim">Seungill Kim</name>
<name sortKey="Lee, Hye Young" sort="Lee, Hye Young" uniqKey="Lee H" first="Hye-Young" last="Lee">Hye-Young Lee</name>
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Global gene expression profiling for fruit organs and pathogen infections in the pepper, Capsicum annuum L.

Global gene expression profiling for fruit organs and pathogen infections in the pepper, Capsicum annuum L.

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